Scientific computing & methods

h/t to Victoria Guazzelli Williamson for curating the list of resources below, gathered during the MDC ABCD Workshop.

Preregistration

• Instructions on creating blinded preregistrations: https://help.osf.io/hc/en-us/articles/360042097853-Create-a-View-only-Link-for-a-Registration

• Examples

  • ABCD example from Monash University: https://osf.io/cjnh4

  • Search for ABCD at OSF.io

Reproducibility

• ReproducibiliTea Group! https://reproducibilitea.org/

• ReproducibiliTea podcast https://soundcloud.com/reproducibilitea

• Great YouTube channel which discusses really good topic on reproducible and open science practices https://www.youtube.com/c/RIOTScienceClub/videos

• Reasons to work reproducibly: https://www.youtube.com/watch?v=yVT07Sukv9Q

Data Science Tools

• R for data science: https://r4ds.had.co.nz/

• A book on EVERYTHING you need to know about using RStudio with Git: https://happygitwithr.com/

• Accessible tutorials for learning R: https://ourcodingclub.github.io/tutorials

• ABCD workshop tutorials: https://abcdworkshop.github.io/bookdown/introduction.html

• fMRIprep overview: https://www.nature.com/articles/s41592-018-0235-4

• Running fMRIprep on a server with no internet: https://fmriprep.org/en/stable/faq.html#i-m-running-fmriprep-via-singularity-containers-how-can-i-troubleshoot-problems

• Datalad for version-controlling large datasets: https://www.datalad.org/

Miscellaneous

• Weston et al., https://pubmed.ncbi.nlm.nih.gov/32190814/

• The case for formal methodology in scientific reform https://royalsocietypublishing.org/doi/10.1098/rsos.200805